Uses of Class
ffx.potential.bonded.StretchTorsion
Packages that use StretchTorsion
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
The terms package contains analytical potential energy terms and their
gradients for bonded interactions (bond, angle, stretch-bend, torsions,
impropers, Urey-Bradley) and restraint terms used by Force Field X.
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Uses of StretchTorsion in ffx.potential.bonded
Methods in ffx.potential.bonded that return StretchTorsionModifier and TypeMethodDescriptionstatic StretchTorsion
StretchTorsion.stretchTorsionFactory
(Torsion torsion, ForceField forceField) Attempt to create a new StretchTorsion based on the supplied torsion.Methods in ffx.potential.bonded that return types with arguments of type StretchTorsionModifier and TypeMethodDescriptionMSNode.getStretchTorsionList()
Returns a List of all StretchTorsions below the present MSNode. -
Uses of StretchTorsion in ffx.potential.terms
Methods in ffx.potential.terms that return StretchTorsionModifier and TypeMethodDescriptionStretchTorsionPotentialEnergy.getStretchTorsion
(int index) Get the StretchTorsion at a given index.StretchTorsionPotentialEnergy.getStretchTorsionArray()
Get an array of StretchTorsions in this term.Methods in ffx.potential.terms that return types with arguments of type StretchTorsionModifier and TypeMethodDescriptionStretchTorsionPotentialEnergy.getStretchTorsions()
Get an unmodifiable view of the StretchTorsions in this term.Methods in ffx.potential.terms with parameters of type StretchTorsionModifier and TypeMethodDescriptionboolean
StretchTorsionPotentialEnergy.addStretchTorsion
(StretchTorsion stretchTorsion) Add a StretchTorsion to this term.boolean
StretchTorsionPotentialEnergy.addStretchTorsions
(StretchTorsion[] stretchTorsions) Add an array of StretchTorsions to this term.boolean
StretchTorsionPotentialEnergy.removeStretchTorsion
(StretchTorsion stretchTorsion) Remove a StretchTorsion from this term.Method parameters in ffx.potential.terms with type arguments of type StretchTorsionModifier and TypeMethodDescriptionboolean
StretchTorsionPotentialEnergy.addStretchTorsions
(List<StretchTorsion> stretchTorsions) Add a list of StretchTorsions to this term.Constructor parameters in ffx.potential.terms with type arguments of type StretchTorsionModifierConstructorDescriptionStretchTorsionPotentialEnergy
(String name, int forceGroup, List<StretchTorsion> stretchTorsions) Create a StretchTorsionPotentialEnergy initialized with a list of terms and force group.StretchTorsionPotentialEnergy
(String name, Collection<StretchTorsion> stretchTorsions) Create a StretchTorsionPotentialEnergy initialized with a collection of terms.