Uses of Class
ffx.potential.bonded.StretchBend
Packages that use StretchBend
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
The terms package contains analytical potential energy terms and their
gradients for bonded interactions (bond, angle, stretch-bend, torsions,
impropers, Urey-Bradley) and restraint terms used by Force Field X.
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Uses of StretchBend in ffx.potential.bonded
Methods in ffx.potential.bonded that return types with arguments of type StretchBendModifier and TypeMethodDescriptionMSNode.getStretchBendList()
Returns a List of all Stretch-Bends below the present MSNode. -
Uses of StretchBend in ffx.potential.terms
Methods in ffx.potential.terms that return StretchBendModifier and TypeMethodDescriptionStretchBendPotentialEnergy.getStretchBend
(int index) Get the StretchBend at a given index.StretchBendPotentialEnergy.getStretchBendArray()
Get an array of StretchBends in this term.Methods in ffx.potential.terms that return types with arguments of type StretchBendModifier and TypeMethodDescriptionStretchBendPotentialEnergy.getStretchBends()
Get an unmodifiable view of the StretchBends in this term.Methods in ffx.potential.terms with parameters of type StretchBendModifier and TypeMethodDescriptionboolean
StretchBendPotentialEnergy.addStretchBend
(StretchBend stretchBend) Add a StretchBend to this term.boolean
StretchBendPotentialEnergy.addStretchBends
(StretchBend[] stretchBends) Add an array of StretchBends to this term.boolean
StretchBendPotentialEnergy.removeStretchBend
(StretchBend stretchBend) Remove a StretchBend from this term.Method parameters in ffx.potential.terms with type arguments of type StretchBendModifier and TypeMethodDescriptionboolean
StretchBendPotentialEnergy.addStretchBends
(List<StretchBend> stretchBends) Add a list of StretchBends to this term.Constructor parameters in ffx.potential.terms with type arguments of type StretchBendModifierConstructorDescriptionStretchBendPotentialEnergy
(String name, int forceGroup, List<StretchBend> stretchBends) Create a StretchBendPotentialEnergy initialized with a list of stretch-bends and force group.StretchBendPotentialEnergy
(String name, Collection<StretchBend> stretchBends) Create a StretchBendPotentialEnergy initialized with a collection of stretch-bends.