Uses of Class
ffx.potential.bonded.OutOfPlaneBend
Packages that use OutOfPlaneBend
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
The terms package contains analytical potential energy terms and their
gradients for bonded interactions (bond, angle, stretch-bend, torsions,
impropers, Urey-Bradley) and restraint terms used by Force Field X.
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Uses of OutOfPlaneBend in ffx.potential.bonded
Methods in ffx.potential.bonded that return OutOfPlaneBendModifier and TypeMethodDescriptionstatic OutOfPlaneBend
OutOfPlaneBend.outOfPlaneBendFactory
(Angle angle, ForceField forceField) Attempt to create a new OutOfPlaneBend instance for a given Angle and Force Field.Methods in ffx.potential.bonded that return types with arguments of type OutOfPlaneBendModifier and TypeMethodDescriptionMSNode.getOutOfPlaneBendList()
Returns a List of all Out-of-Plane Bends below the present MSNode. -
Uses of OutOfPlaneBend in ffx.potential.terms
Methods in ffx.potential.terms that return OutOfPlaneBendModifier and TypeMethodDescriptionOutOfPlaneBendPotentialEnergy.getOutOfPlaneBend
(int index) Get the OutOfPlaneBend at a given index.OutOfPlaneBendPotentialEnergy.getOutOfPlaneBendArray()
Get an array of OutOfPlaneBends in this term.Methods in ffx.potential.terms that return types with arguments of type OutOfPlaneBendModifier and TypeMethodDescriptionOutOfPlaneBendPotentialEnergy.getOutOfPlaneBends()
Get an unmodifiable view of the OutOfPlaneBends in this term.Methods in ffx.potential.terms with parameters of type OutOfPlaneBendModifier and TypeMethodDescriptionboolean
OutOfPlaneBendPotentialEnergy.addOutOfPlaneBend
(OutOfPlaneBend outOfPlaneBend) Add an OutOfPlaneBend to this term.boolean
OutOfPlaneBendPotentialEnergy.addOutOfPlaneBends
(OutOfPlaneBend[] outOfPlaneBends) Add an array of OutOfPlaneBends to this term.boolean
OutOfPlaneBendPotentialEnergy.removeOutOfPlaneBend
(OutOfPlaneBend outOfPlaneBend) Remove an OutOfPlaneBend from this term.Method parameters in ffx.potential.terms with type arguments of type OutOfPlaneBendModifier and TypeMethodDescriptionboolean
OutOfPlaneBendPotentialEnergy.addOutOfPlaneBends
(List<OutOfPlaneBend> outOfPlaneBends) Add a list of OutOfPlaneBends to this term.Constructor parameters in ffx.potential.terms with type arguments of type OutOfPlaneBendModifierConstructorDescriptionOutOfPlaneBendPotentialEnergy
(String name, int forceGroup, List<OutOfPlaneBend> outOfPlaneBends) Create an OutOfPlaneBendPotentialEnergy initialized with a list of terms and force group.OutOfPlaneBendPotentialEnergy
(String name, Collection<OutOfPlaneBend> outOfPlaneBends) Create an OutOfPlaneBendPotentialEnergy initialized with a collection of terms.