Uses of Class
ffx.potential.bonded.BondedUtils.MissingHeavyAtomException
Package
Description
The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions,
etc.
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Uses of BondedUtils.MissingHeavyAtomException in ffx.potential.bonded
Modifier and TypeMethodDescriptionstatic void
AminoAcidUtils.assignAminoAcidAtomTypes
(Residue residue, Residue previousResidue, Residue nextResidue, ForceField forceField, List<Bond> bondList) assignAminoAcidAtomTypes.static void
AminoAcidUtils.assignAminoAcidAtomTypes
(List<Residue> residues, ForceField forceField, List<Bond> bondList) Assign atom types to an amino acid polymer.static void
NucleicAcidUtils.assignNucleicAcidAtomTypes
(List<Residue> residues, ForceField forceField, List<Bond> bondList) Assign atom types for a nucleic acid polymer.static Atom
BondedUtils.buildHeavy
(MSGroup residue, String atomName, Atom bondedTo, int key, ForceField forceField, List<Bond> bondList) Build a heavy atom.