Uses of Class
ffx.potential.bonded.BondedUtils.MissingHeavyAtomException

Packages that use BondedUtils.MissingHeavyAtomException

Package	Description
ffx.potential.bonded	The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions, etc.

Uses of BondedUtils.MissingHeavyAtomException in ffx.potential.bonded

Methods in ffx.potential.bonded that throw BondedUtils.MissingHeavyAtomException

Modifier and Type	Method	Description
static void	AminoAcidUtils.assignAminoAcidAtomTypes(Residue residue, Residue previousResidue, Residue nextResidue, ForceField forceField, List<Bond> bondList)	assignAminoAcidAtomTypes.
static void	AminoAcidUtils.assignAminoAcidAtomTypes(List<Residue> residues, ForceField forceField, List<Bond> bondList)	Assign atom types to an amino acid polymer.
static void	NucleicAcidUtils.assignNucleicAcidAtomTypes(List<Residue> residues, ForceField forceField, List<Bond> bondList)	Assign atom types for a nucleic acid polymer.
static Atom	BondedUtils.buildHeavy(MSGroup residue, String atomName, Atom bondedTo, int key, ForceField forceField, List<Bond> bondList)	Build a heavy atom.