Package ffx.numerics.clustering.visualization

Class DendrogramPanel

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

ffx.numerics.clustering.visualization.DendrogramPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class DendrogramPanel
extends JPanel

Swing panel responsible for laying out and drawing a dendrogram for a hierarchical Cluster model, including optional scale and distance labels.

Since:

1.0

Author:

Lars Behnke, 2013, Michael J. Schnieders

See Also:

• Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
DendrogramPanel()

Method Summary

Modifier and Type	Method	Description
int	getBorderBottom()
int	getBorderLeft()
int	getBorderRight()
int	getBorderTop()
Color	getLineColor()
Cluster	getModel()
int	getScalePadding()	Gets the padding (pixels) between the dendrogram and the scale axis.
int	getScaleTickLength()
int	getScaleValueDecimals()
double	getScaleValueInterval()
boolean	isShowDistanceValues()	Returns whether linkage distance values should be rendered on the dendrogram.
boolean	isShowScale()	Returns whether the X-axis scale should be drawn below the dendrogram.
void	paint(Graphics g)
void	setBorderBottom(int borderBottom)
void	setBorderLeft(int borderLeft)
void	setBorderRight(int borderRight)
void	setBorderTop(int borderTop)
void	setLineColor(Color lineColor)
void	setModel(Cluster model)
void	setScalePadding(int scalePadding)	Sets the padding (pixels) between the dendrogram and the scale axis.
void	setScaleTickLength(int scaleTickLength)
void	setScaleValueDecimals(int scaleValueDecimals)
void	setScaleValueInterval(double scaleTickInterval)
void	setShowDistances(boolean showDistanceValues)	Sets whether linkage distance values should be rendered on the dendrogram.
void	setShowScale(boolean showScale)	Sets whether the X-axis scale should be drawn below the dendrogram.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

DendrogramPanel

public DendrogramPanel()

Method Details

isShowDistanceValues

public boolean isShowDistanceValues()

Returns whether linkage distance values should be rendered on the dendrogram.

Returns:

true if distance values are shown

setShowDistances

public void setShowDistances(boolean showDistanceValues)

Sets whether linkage distance values should be rendered on the dendrogram.

Parameters:

showDistanceValues - true to show distance values

isShowScale

public boolean isShowScale()

Returns whether the X-axis scale should be drawn below the dendrogram.

Returns:

true if the scale is shown

setShowScale

public void setShowScale(boolean showScale)

Sets whether the X-axis scale should be drawn below the dendrogram.

Parameters:

showScale - true to show the scale

getScalePadding

public int getScalePadding()

Gets the padding (pixels) between the dendrogram and the scale axis.

Returns:

padding in pixels

setScalePadding

public void setScalePadding(int scalePadding)

Sets the padding (pixels) between the dendrogram and the scale axis.

Parameters:

scalePadding - padding in pixels

getScaleTickLength

public int getScaleTickLength()

setScaleTickLength

public void setScaleTickLength(int scaleTickLength)

getScaleValueInterval

public double getScaleValueInterval()

setScaleValueInterval

public void setScaleValueInterval(double scaleTickInterval)

getScaleValueDecimals

public int getScaleValueDecimals()

setScaleValueDecimals

public void setScaleValueDecimals(int scaleValueDecimals)

getBorderTop

public int getBorderTop()

setBorderTop

public void setBorderTop(int borderTop)

getBorderLeft

public int getBorderLeft()

setBorderLeft

public void setBorderLeft(int borderLeft)

getBorderRight

public int getBorderRight()

setBorderRight

public void setBorderRight(int borderRight)

getBorderBottom

public int getBorderBottom()

setBorderBottom

public void setBorderBottom(int borderBottom)

getLineColor

public Color getLineColor()

setLineColor

public void setLineColor(Color lineColor)

getModel

public Cluster getModel()

setModel

public void setModel(Cluster model)

paint

public void paint(Graphics g)

Overrides:

paint in class JComponent