Uses of Class
ffx.algorithms.thermodynamics.LambdaData
Packages that use LambdaData
Package
Description
The Thermodynamics package computes free energy differences using Orthogonal Space Tempering
(OST) sampling via pure Java or OpenMM (via Monte Carlo OST).
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Uses of LambdaData in ffx.algorithms.thermodynamics
Methods in ffx.algorithms.thermodynamics that return LambdaDataModifier and TypeMethodDescriptionstatic LambdaDataLambdaData.readLambdaData(File file) Unmarshall the histogram data.Methods in ffx.algorithms.thermodynamics with parameters of type LambdaDataModifier and TypeMethodDescriptionvoidOrthogonalSpaceTempering.addHistogram(HistogramData histogramData, LambdaData lambdaData) Add an alternate Histogram this OST can use.static voidLambdaData.writeLambdaData(LambdaData lambdaData, File lambdaFile) Marshall the lambda data to a file.Constructors in ffx.algorithms.thermodynamics with parameters of type LambdaDataModifierConstructorDescriptionOrthogonalSpaceTempering(LambdaInterface lambdaInterface, CrystalPotential potential, HistogramData histogramData, LambdaData lambdaData, org.apache.commons.configuration2.CompositeConfiguration properties, DynamicsOptions dynamicsOptions, LambdaParticleOptions lambdaParticleOptions, AlgorithmListener algorithmListener) OST Constructor.