Uses of Package
ffx.algorithms.optimize.manybody

Packages that use ffx.algorithms.optimize.manybody

Package	Description
ffx.algorithms.optimize	The Optimize package contains local and global optimization algorithms using pure Java and OpenMM code paths.
ffx.algorithms.optimize.manybody	The manybody package implements many-body rotamer optimization infrastructure, including distance matrices, an energy expansion (self, two-body, three-body, and four-body), Dead-end elimination criteria, Goldstein elimination criteria, and supporting data structures for efficient optimization.

Classes in ffx.algorithms.optimize.manybody used by ffx.algorithms.optimize

Class	Description
EliminatedRotamers
EnergyExpansion

Classes in ffx.algorithms.optimize.manybody used by ffx.algorithms.optimize.manybody

Class	Description
DistanceMatrix	Calculates a residue-residue distance matrix.
DistanceMatrix.NeighborDistances	Store all neighbors of a residue / rotamer pair.
EliminatedRotamers
EnergyExpansion