Uses of Class
ffx.potential.parameters.BondType

Packages that use BondType

Package	Description
ffx.potential.bonded	The Bonded package implements bonded molecular mechanics terms such as bonds, angles, torsions, etc.
ffx.potential.parameters	The Parameters package stores force field atom types, bond types, etc, and keywords that define the potential.

Uses of BondType in ffx.potential.bonded

Fields in ffx.potential.bonded declared as BondType

Modifier and Type	Field	Description
BondType	Bond.bondType	The force field BondType for this bond.
BondType	RestrainDistance.bondType
BondType	StretchTorsion.bondType1	First bond force field type.
BondType	StretchTorsion.bondType2	Second bond force field type.
BondType	StretchTorsion.bondType3	Third bond force field type.

Methods in ffx.potential.bonded that return BondType

Modifier and Type	Method	Description
BondType	Bond.getBondType()	Return the BondType for this Bond.
BondType	RestrainDistance.getBondType()	Getter for the field bondType.

Methods in ffx.potential.bonded with parameters of type BondType

Modifier and Type	Method	Description
void	Bond.setBondType(BondType bondType)	Set a reference to the force field parameters.
void	RestrainDistance.setBondType(BondType bondType)	Set a reference to the force field parameters.

Uses of BondType in ffx.potential.parameters

Methods in ffx.potential.parameters that return BondType

Modifier and Type	Method	Description
static BondType	BondType.average(BondType bondType1, BondType bondType2, int[] atomClasses)	Average two BondType instances.
BondType	ForceField.getBondType(AtomType a1, AtomType a2)	getBondType
BondType	ForceField.getBondType(String key)	getBondType
static BondType	BondType.parse(String input, String[] tokens)	Construct a BondType from an input string.
BondType	BondType.patchClasses(HashMap<AtomType,AtomType> typeMap)	Remap new atom classes to known internal ones.

Methods in ffx.potential.parameters with parameters of type BondType

Modifier and Type	Method	Description
static BondType	BondType.average(BondType bondType1, BondType bondType2, int[] atomClasses)	Average two BondType instances.