Uses of Class
ffx.potential.DualTopologyEnergy

Packages that use DualTopologyEnergy

Package	Description
ffx.potential	The Potential package implements molecular mechanics force fields with shared memory Parallel Java and via OpenMM.
ffx.potential.openmm	The openmm package contains utilities to construct and run Force Field X potentials on the OpenMM platform, including system builders, custom forces, alchemical fixed-charge forces, and integrators tailored to FFX simulations.

Uses of DualTopologyEnergy in ffx.potential

Methods in ffx.potential that return DualTopologyEnergy

Modifier and Type	Method	Description
static DualTopologyEnergy	DualTopologyEnergy.energyFactory(MolecularAssembly molecularAssembly1, MolecularAssembly molecularAssembly2, UnivariateSwitchingFunction switchFunction)	Static factory method to create a DualTopologyEnergy, possibly via FFX or OpenMM implementations.
DualTopologyEnergy	QuadTopologyEnergy.getDualTopA()	Returns the first component DualTopologyEnergy.
DualTopologyEnergy	QuadTopologyEnergy.getDualTopB()	Returns the second component DualTopologyEnergy.

Constructors in ffx.potential with parameters of type DualTopologyEnergy

Modifier	Constructor	Description
	QuadTopologyEnergy(DualTopologyEnergy dualTopologyA, DualTopologyEnergy dualTopologyB)	General structure: first layer will be the "A/B" layer, consisting of the two dual topologies.
	QuadTopologyEnergy(DualTopologyEnergy dualTopologyA, DualTopologyEnergy dualTopologyB, List<Integer> uniqueAList, List<Integer> uniqueBList)	General structure: first layer will be the "A/B" layer, consisting of the two dual topologies.

Uses of DualTopologyEnergy in ffx.potential.openmm

Subclasses of DualTopologyEnergy in ffx.potential.openmm

Modifier and Type	Class	Description
class	OpenMMDualTopologyEnergy