Uses of Class
ffx.openmm.IntArray
Packages that use IntArray
Package
Description
The OpenMM package includes Java classes that are analogues of the OpenMM C++ API.
The AMOEBA package includes Java classes that are analogues of the OpenMM C++ API
for the AMOEBA model.
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Uses of IntArray in ffx.openmm
Methods in ffx.openmm with parameters of type IntArrayModifier and TypeMethodDescriptionintCustomCentroidBondForce.addBond(IntArray groups, DoubleArray parameters) Add a bond to the forceintCustomCompoundBondForce.addBond(IntArray particles, DoubleArray parameters) Add a bond to the force.intCustomCentroidBondForce.addGroup(IntArray particles, DoubleArray weights) Add a particle group.voidCustomCentroidBondForce.getBondParameters(int index, IntArray groups, DoubleArray parameters) Get the properties of a bond.voidCustomCompoundBondForce.getBondParameters(int index, IntArray particles, DoubleArray parameters) Get the parameters for a bond.voidCustomCentroidBondForce.getGroupParameters(int index, IntArray particles, DoubleArray weights) Get the properties of a group.voidCustomCentroidBondForce.setBondParameters(int index, IntArray groups, DoubleArray parameters) Set the properties of a bond.voidCustomCompoundBondForce.setBondParameters(int index, IntArray particles, DoubleArray parameters) Set the parameters for a bond.voidCustomCentroidBondForce.setGroupParameters(int index, IntArray particles, DoubleArray weights) Set the properties of a group. -
Uses of IntArray in ffx.openmm.amoeba
Methods in ffx.openmm.amoeba that return IntArrayModifier and TypeMethodDescriptionMultipoleForce.getCovalentMap(int i, int covalentType) Get the covalent map for a given atom index and covalent type.MultipoleForce.getCovalentMaps(int i) Get all covalent maps for a given atom index.VdwForce.getParticleExclusions(int i) Get the particle exclusions.MultipoleForce.getPmeGridDimensions()Get the PME grid dimensions.Methods in ffx.openmm.amoeba with parameters of type IntArrayModifier and TypeMethodDescriptionvoidMultipoleForce.setCovalentMap(int i, int covalentType, IntArray covalentMap) Set the covalent map.voidVdwForce.setParticleExclusions(int i, IntArray exclusions) Set the particle exclusions.voidMultipoleForce.setPmeGridDimensions(IntArray gridDimensions) Set the PME grid dimensions for the multipole force.