Uses of Class
ffx.numerics.clustering.ClusterPair

Packages that use ClusterPair

Package	Description
ffx.numerics.clustering	The clustering package provides hierarchical agglomerative clustering utilities, including linkage strategies (single, complete, average, weighted), distance map management, and supporting data structures and algorithms.

Uses of ClusterPair in ffx.numerics.clustering

Classes in ffx.numerics.clustering that implement interfaces with type arguments of type ClusterPair

Modifier and Type	Class	Description
class	ClusterPair	Immutable-like holder describing a pair of clusters and the linkage distance between them; used as entries within the DistanceMap during agglomeration.

Methods in ffx.numerics.clustering that return ClusterPair

Modifier and Type	Method	Description
ClusterPair	DistanceMap.findByCodePair(Cluster c1, Cluster c2)	Finds the ClusterPair for the two provided clusters.
ClusterPair	DistanceMap.removeFirst()	Removes and returns the minimal-distance pair (according to priority queue ordering).
ClusterPair	ClusterPair.reverse()	Creates a new ClusterPair with left and right clusters swapped.

Methods in ffx.numerics.clustering that return types with arguments of type ClusterPair

Modifier and Type	Method	Description
List<ClusterPair>	DistanceMap.list()	Returns a snapshot list of all cluster pairs currently stored.

Methods in ffx.numerics.clustering with parameters of type ClusterPair

Modifier and Type	Method	Description
boolean	DistanceMap.add(ClusterPair link)	Adds a new ClusterPair if no equivalent pair already exists.
int	ClusterPair.compareTo(ClusterPair o)
boolean	DistanceMap.remove(ClusterPair link)	Marks the given ClusterPair as removed (lazy removal) and drops it from the hash index.