Uses of Class
edu.rit.pj.IntegerSchedule

Packages that use IntegerSchedule

Package	Description
edu.rit.pj	The PJ package (Parallel Java) support shared memory, message passing and hybrid shared memory/message passing parallelization in pure Java.
ffx.algorithms.optimize.manybody	The manybody package implements many-body rotamer optimization infrastructure, including distance matrices, an energy expansion (self, two-body, three-body, and four-body), Dead-end elimination criteria, Goldstein elimination criteria, and supporting data structures for efficient optimization.
ffx.numerics.fft	The FFT package implements 1D and 3D FFTs of real or complex valued data, including SMP parallelization of 3D transforms and convolution using the Parallel Java library.
ffx.potential.nonbonded	The Nonbonded package implements nonbonded molecular mechanics terms such as van der Waals and Particle Mesh Ewald electrostastics.
ffx.potential.nonbonded.pme	The pme package implements polarization and permanent electrostatics using Particle Mesh Ewald (PME).
ffx.xray	The X-ray package implements support for X-ray and Neutron refinement.

Uses of IntegerSchedule in edu.rit.pj

Methods in edu.rit.pj that return IntegerSchedule

Modifier and Type	Method	Description
static IntegerSchedule	IntegerSchedule.dynamic()	Returns a dynamic schedule object with a chunk size of 1.
static IntegerSchedule	IntegerSchedule.dynamic(int theChunkSize)	Returns a dynamic schedule object with the given chunk size.
static IntegerSchedule	IntegerSchedule.fixed()	Returns a fixed schedule object.
static IntegerSchedule	IntegerSchedule.guided()	Returns a self-guided schedule object with a minimum chunk size of 1.
static IntegerSchedule	IntegerSchedule.guided(int theChunkSize)	Returns a self-guided schedule object with the given minimum chunk size.
static IntegerSchedule	IntegerSchedule.parse(String s)	Returns a schedule object of a type determined by parsing the given string.
static IntegerSchedule	IntegerSchedule.runtime()	Returns a schedule object of a type determined at run time.
static IntegerSchedule	IntegerSchedule.runtime(IntegerSchedule defaultSchedule)	Returns a schedule object of a type determined at run time, using the given default schedule.
IntegerSchedule	IntegerForLoop.schedule()	Determine this parallel for loop's schedule.
IntegerSchedule	IntegerStrideForLoop.schedule()	Determine this parallel for loop's schedule.
IntegerSchedule	WorkerIntegerForLoop.schedule()	Determine this worker for loop's schedule.
IntegerSchedule	WorkerIntegerStrideForLoop.schedule()	Determine this worker for loop's schedule.

Methods in edu.rit.pj with parameters of type IntegerSchedule

Modifier and Type	Method	Description
static IntegerSchedule	IntegerSchedule.runtime(IntegerSchedule defaultSchedule)	Returns a schedule object of a type determined at run time, using the given default schedule.

Uses of IntegerSchedule in ffx.algorithms.optimize.manybody

Constructors in ffx.algorithms.optimize.manybody with parameters of type IntegerSchedule

Modifier	Constructor	Description
	DistanceRegion(int nt, int nResidues, Crystal crystal, int[][][] lists, IntegerSchedule schedule)

Uses of IntegerSchedule in ffx.numerics.fft

Constructors in ffx.numerics.fft with parameters of type IntegerSchedule

Modifier	Constructor	Description
	Complex3DParallel(int nX, int nY, int nZ, ParallelTeam parallelTeam, IntegerSchedule integerSchedule)	Initialize the 3D FFT for complex 3D matrix.
	Complex3DParallel(int nX, int nY, int nZ, ParallelTeam parallelTeam, IntegerSchedule integerSchedule, DataLayout3D dataLayout)	Initialize the 3D FFT for complex 3D matrix.
	Real3DParallel(int nX, int nY, int nZ, ParallelTeam parallelTeam, IntegerSchedule integerSchedule)	Initialize the FFT for real input.

Uses of IntegerSchedule in ffx.potential.nonbonded

Subclasses of IntegerSchedule in ffx.potential.nonbonded

Modifier and Type	Class	Description
class	PairwiseSchedule	A fixed schedule that balances pairwise work across threads.
class	SpatialDensitySchedule	A fixed schedule that load balances work chunks across threads.

Methods in ffx.potential.nonbonded that return IntegerSchedule

Modifier and Type	Method	Description
IntegerSchedule	ReciprocalSpace.BSplineRegion.BSplineLoop.schedule()
IntegerSchedule	SpatialDensityLoop.schedule()	Determine this parallel for loop's schedule.

Uses of IntegerSchedule in ffx.potential.nonbonded.pme

Fields in ffx.potential.nonbonded.pme declared as IntegerSchedule

Modifier and Type	Field	Description
IntegerSchedule	RealSpaceNeighborParameters.realSpaceSchedule	Pairwise schedule for load balancing.
IntegerSchedule	AlchemicalParameters.vaporEwaldSchedule
IntegerSchedule	AlchemicalParameters.vaporPermanentSchedule

Methods in ffx.potential.nonbonded.pme with parameters of type IntegerSchedule

Modifier and Type	Method	Description
void	PCGSolver.init(Atom[] atoms, double[][][] coordinates, double[] polarizability, double[] ipdamp, double[] thole, boolean[] use, Crystal crystal, double[][][] inducedDipole, double[][][] inducedDipoleCR, double[][] directDipole, double[][] directDipoleCR, AtomicDoubleArray3D field, AtomicDoubleArray3D fieldCR, EwaldParameters ewaldParameters, double dieletric, ParallelTeam parallelTeam, IntegerSchedule realSpaceSchedule, PMETimings pmeTimings)
void	PermanentFieldRegion.init(Atom[] atoms, Crystal crystal, double[][][] coordinates, double[][][] globalMultipole, double[][][] inducedDipole, double[][][] inducedDipoleCR, int[][][] neighborLists, ScaleParameters scaleParameters, boolean[] use, int[] molecule, double[] ipdamp, double[] thole, int[][] ip11, int[][] mask12, int[][] mask13, int[][] mask14, LambdaMode lambdaMode, boolean reciprocalSpaceTerm, ReciprocalSpace reciprocalSpace, EwaldParameters ewaldParameters, PCGSolver pcgSolver, IntegerSchedule permanentSchedule, RealSpaceNeighborParameters realSpaceNeighborParameters, AtomicDoubleArray3D field, AtomicDoubleArray3D fieldCR)

Uses of IntegerSchedule in ffx.xray

Subclasses of IntegerSchedule in ffx.xray

Modifier and Type	Class	Description
class	GradientSchedule	GradientSchedule class.
class	RowSchedule	RowSchedule class.
class	SliceSchedule	SliceSchedule class.